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- Azureus : Java BitTorrent Client
- An advanced multiplatform BitTorrent client written in Java that includes a tracker and a torrent maker components needed to run a BitTorrent solution; available in many languages. Latest release is 3.0.5.2, 2008-04-15.
- FreeMarker
- A "template engine"; a generic tool to generate text output (anything from HTML to autogenerated source code) based on templates. It's a Java package, a class library for Java programmers. Latest stable release is 2.3.13, 2008-05-05.
- GCJ: The GNU Compiler for Java
- A portable, optimizing, ahead-of-time compiler for the Java programming language.
- IBM developerWorks: Java: IBM Developer Kit for Linux - Java 2 Technology Edition
- A development kit and runtime environment that contains IBM's just-in-time compiler, enhanced with a unique Mixed Mode Interpreter and a re-engineered Java 2 virtual machine.
- IcedTea
- This project provides a harness to build the source code from the OpenJDK project using Free Software build tools and provides replacements for the binary plugs with code from the GNU Classpath project.
- JBuilder for Linux
- An application server-independent enterprise class IDE built on open source Eclipse. N.B. Software can be downloaded free, but it is proprietary software.
- JFlex - The Fast Scanner Generator for Java
- A lexical analyzer generator (also known as scanner generator) for Java, written in Java. Latest stable release is 1.4.2, 2008-05-27.
- JUSB - Java USB (for GNU/Linux)
- Java access to USB, currently using kernel 2.4 Linux-USB support; latest version is 0.4.4, 2001-02-14. N.B.: this is a popular project with lots of daily downloads. (2006)
- Jetty Java HTTP Servlet Server
- An open source, standards-based, full-featured web server implemented entirely in java. Latest stable release is 6.1.0, 2006.
- Jython Home Page
- Jython is an implementation of the Python language written in 100% Pure Java, and seamlessly integrated with the Java platform. Latest release is 2.2, 2007-08-23.
- Kaffe.org - Kaffe Virtual Machine
- A clean-room implementation of the Java virtual machine, plus the associated class libraries needed to provide a Java runtime environment. Latest release is 1.1.7, 2006-03-27.
- O'Reilly Network: Open Source Java Directory
- A browsable directory of Java aplications.
- Ozone Database Project
- An object-oriented database management system implemented in Java; latest release is 1.2.1, 2005-11-29.
- SableCC Parser Generator
- An object-oriented framework that generates compilers and interpreters in Java.
- SableVM Free Java Virtual Machine Project
- A free implementation of Java Virtual Machine specification. Latest stable release is 1.13, 2005-12-06.
- The Castor Project
- Mapping framework between Java objects, XML documents, SQL & OQL databases and LDAP directories.
- The SAXON XSLT Processor
- A cross-platform, open source XSLT and XQuery processor. Latest stable release is 9.1.0.1, 2008-07-02.
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